PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g17430.2
Common NameLR48_Vigan01g309200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 345aa    MW: 38439 Da    PI: 4.9098
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g17430.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.2e-184896355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  Vang11g17430.2 48 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 96
                    56******.**********965...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.4E-3247110IPR001471AP2/ERF domain
CDDcd000181.09E-2747103No hitNo description
PROSITE profilePS5103220.54747104IPR001471AP2/ERF domain
PRINTSPR003671.3E-74859IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-2848104IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-2048105IPR016177DNA-binding domain
PfamPF008472.9E-115096IPR001471AP2/ERF domain
PRINTSPR003671.3E-77086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSTSRTSDTP FKGYDPNQTQ MCLSLLQRNT SPSGERRGRR KQAEPGRFLG VRRRPWGRYA  60
AEIRDPTTKE RHWLGTFDTA QEAALAYDRA ALSMKGNQAR TNFVYSDNIN FHTILSPADV  120
QVQLQLQPLL PPSQFLSNTT HTKQPNNQNS LPKVVHTSNT GNPSPLNNDA FVEIETTYGS  180
ADQDDSFFFS SDSNSGYLEC IVPDNCFRPA SSRTNSSNSR KSNVSDQKAN TNSSESTNHH  240
EQYYYSQEMA GMASNFSEFC YPSEVMSQGS WDDQQSWDWN CSELSAIFKN PLRVENGCMD  300
ALYPMSDDQS PSPSYGVMNE CASSTTCSPS LPPFGDVDLG YPLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-1948103359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508449.10.0PREDICTED: ethylene-responsive transcription factor ERF086-like
SwissprotQ6J9Q21e-59ERF86_ARATH; Ethylene-responsive transcription factor ERF086
TrEMBLA0A0L9TSR30.0A0A0L9TSR3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R9220.0A0A0S3R922_PHAAN; Uncharacterized protein
STRINGGLYMA07G37990.21e-175(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57843351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.13e-51ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]